Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1562078..1562252 | Replicon | chromosome |
| Accession | NZ_CP023529 | ||
| Organism | Lelliottia amnigena strain FDAARGOS_395 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1562083..1562173 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1562078..1562252 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO697_RS07720 | 1558089..1559531 | + | 1443 | WP_059179729.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CO697_RS07725 | 1559635..1559874 | + | 240 | WP_015959408.1 | YebV family protein | - |
| CO697_RS07730 | 1559979..1560170 | + | 192 | WP_015959409.1 | YebW family protein | - |
| CO697_RS07735 | 1560171..1560815 | - | 645 | WP_059179728.1 | protein-serine/threonine phosphatase | - |
| CO697_RS07740 | 1560983..1561924 | + | 942 | WP_059179727.1 | VirK/YbjX family protein | - |
| - | 1562078..1562252 | + | 175 | - | - | Antitoxin |
| - | 1562083..1562173 | - | 91 | - | - | Toxin |
| CO697_RS07745 | 1562327..1562665 | - | 339 | WP_059179726.1 | YebY family protein | - |
| CO697_RS07750 | 1562680..1563552 | - | 873 | WP_059179725.1 | copper homeostasis membrane protein CopD | - |
| CO697_RS07755 | 1563554..1563928 | - | 375 | WP_059179724.1 | CopC domain-containing protein YobA | - |
| CO697_RS07760 | 1564066..1564296 | + | 231 | WP_059179723.1 | DNA polymerase III subunit theta | - |
| CO697_RS07765 | 1564407..1565063 | + | 657 | WP_059179722.1 | carbon-nitrogen hydrolase family protein | - |
| CO697_RS07770 | 1565088..1565750 | + | 663 | WP_059179721.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 bp
>T81503 NZ_CP023529:c1562173-1562083 [Lelliottia amnigena]
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
AGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATACAGGAATCGTATTC
GGTCTCTTTTT
Antitoxin
Download Length: 175 bp
>AT81503 NZ_CP023529:1562078-1562252 [Lelliottia amnigena]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAACTACGCCTGACACTCTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACTAAAGTGG
TCAGAAAAAAAGCGT
