Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2642109..2642380 | Replicon | chromosome |
| Accession | NZ_CP023383 | ||
| Organism | Escherichia coli strain 1223 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2642147..2642250 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2642109..2642380 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ49_RS13630 | 2639266..2640705 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CNQ49_RS13635 | 2640823..2641059 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ49_RS13640 | 2641164..2641355 | + | 192 | WP_000457842.1 | YebW family protein | - |
| CNQ49_RS13645 | 2641356..2642012 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2642109..2642380 | + | 272 | - | - | Antitoxin |
| - | 2642147..2642250 | - | 104 | - | - | Toxin |
| CNQ49_RS13650 | 2642408..2642749 | - | 342 | WP_000976476.1 | YebY family protein | - |
| CNQ49_RS13655 | 2642762..2643634 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| CNQ49_RS13660 | 2643638..2644012 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ49_RS13665 | 2644151..2644381 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ49_RS13670 | 2644483..2645139 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ49_RS13675 | 2645163..2645825 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T81073 NZ_CP023383:c2642250-2642147 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT81073 NZ_CP023383:2642109-2642380 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
