Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2413878..2414146 | Replicon | chromosome |
| Accession | NZ_CP023357 | ||
| Organism | Escherichia coli strain 317 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2414006..2414108 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2413878..2414146 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ55_RS11840 | 2410430..2411092 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CNQ55_RS11845 | 2411116..2411772 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| CNQ55_RS11850 | 2411875..2412105 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CNQ55_RS11855 | 2412244..2412618 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CNQ55_RS11860 | 2412622..2413494 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| CNQ55_RS11865 | 2413507..2413848 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2413878..2414146 | - | 269 | - | - | Antitoxin |
| - | 2414006..2414108 | + | 103 | - | - | Toxin |
| CNQ55_RS11870 | 2414243..2414899 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| CNQ55_RS11875 | 2414900..2415091 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CNQ55_RS11880 | 2415196..2415432 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CNQ55_RS11885 | 2415550..2416989 | - | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T80874 NZ_CP023357:2414006-2414108 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT80874 NZ_CP023357:c2414146-2413878 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
