Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2192065..2192336 | Replicon | chromosome |
| Accession | NZ_CP023142 | ||
| Organism | Escherichia coli strain CFSAN061770 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2192195..2192298 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2192065..2192336 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA696_RS11110 | 2188620..2189282 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CA696_RS11115 | 2189306..2189962 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CA696_RS11120 | 2190064..2190294 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CA696_RS11125 | 2190433..2190807 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| CA696_RS11130 | 2190811..2191683 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| CA696_RS11135 | 2191696..2192037 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 2192065..2192336 | - | 272 | - | - | Antitoxin |
| - | 2192195..2192298 | + | 104 | - | - | Toxin |
| CA696_RS11140 | 2192433..2193089 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| CA696_RS11145 | 2193090..2193281 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CA696_RS11150 | 2193386..2193622 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CA696_RS11155 | 2193740..2195179 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2184755..2208175 | 23420 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80481 NZ_CP023142:2192195-2192298 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80481 NZ_CP023142:c2192336-2192065 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
