Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2149402..2149673 | Replicon | chromosome |
| Accession | NZ_CP022912 | ||
| Organism | Escherichia coli O6:H16 strain 2011EL-1370-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2149532..2149635 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2149402..2149673 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJZ79_RS11155 | 2145957..2146619 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| CJZ79_RS11160 | 2146643..2147299 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CJZ79_RS11165 | 2147401..2147631 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CJZ79_RS11170 | 2147770..2148144 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| CJZ79_RS11175 | 2148148..2149020 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CJZ79_RS11180 | 2149033..2149374 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2149402..2149673 | - | 272 | - | - | Antitoxin |
| - | 2149532..2149635 | + | 104 | - | - | Toxin |
| CJZ79_RS11185 | 2149770..2150426 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| CJZ79_RS11190 | 2150427..2150618 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CJZ79_RS11195 | 2150723..2150959 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CJZ79_RS11200 | 2151077..2152516 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T80135 NZ_CP022912:2149532-2149635 [Escherichia coli O6:H16]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT80135 NZ_CP022912:c2149673-2149402 [Escherichia coli O6:H16]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
