Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 374652..374886 | Replicon | chromosome |
| Accession | NZ_CP022455 | ||
| Organism | Shigella sonnei strain 2015C-3794 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 374782..374885 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 374652..374886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B9129_RS02225 | 371207..371869 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| B9129_RS02230 | 371893..372549 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| B9129_RS02235 | 372651..372881 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B9129_RS02240 | 373020..373394 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| B9129_RS02245 | 373398..374270 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| B9129_RS02250 | 374283..374624 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 374652..374886 | - | 235 | - | - | Antitoxin |
| - | 374782..374885 | + | 104 | - | - | Toxin |
| B9129_RS02255 | 375017..376093 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| B9129_RS02260 | 376130..376375 | - | 246 | Protein_398 | IS1 family transposase | - |
| B9129_RS02275 | 377756..378511 | - | 756 | WP_001282649.1 | IS21-like element ISSso4 family helper ATPase IstB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 369150..404491 | 35341 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T79057 NZ_CP022455:374782-374885 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT79057 NZ_CP022455:c374886-374652 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
