Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3591214..3591485 | Replicon | chromosome |
| Accession | NZ_CP022393 | ||
| Organism | Escherichia coli strain E62 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3591252..3591355 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3591214..3591485 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEJ55_RS18210 | 3588371..3589810 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CEJ55_RS18215 | 3589928..3590164 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CEJ55_RS18220 | 3590269..3590460 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CEJ55_RS18225 | 3590461..3591117 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3591214..3591485 | + | 272 | - | - | Antitoxin |
| - | 3591252..3591355 | - | 104 | - | - | Toxin |
| CEJ55_RS18230 | 3591513..3591854 | - | 342 | WP_000976492.1 | YebY family protein | - |
| CEJ55_RS18235 | 3591867..3592739 | - | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| CEJ55_RS18240 | 3592743..3593117 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CEJ55_RS18245 | 3593256..3593486 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CEJ55_RS18250 | 3593588..3594244 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| CEJ55_RS18255 | 3594268..3594930 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78949 NZ_CP022393:c3591355-3591252 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT78949 NZ_CP022393:3591214-3591485 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
