Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4941752..4942023 | Replicon | chromosome |
| Accession | NZ_CP022229 | ||
| Organism | Escherichia coli strain WCHEC96200 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4941790..4941893 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4941752..4942023 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBR04_RS26055 | 4938909..4940348 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DBR04_RS26060 | 4940466..4940702 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DBR04_RS26065 | 4940807..4940998 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DBR04_RS26070 | 4940999..4941655 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 4941752..4942023 | + | 272 | - | - | Antitoxin |
| - | 4941790..4941893 | - | 104 | - | - | Toxin |
| DBR04_RS26075 | 4942051..4942392 | - | 342 | WP_001520705.1 | YebY family protein | - |
| DBR04_RS26080 | 4942405..4943277 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| DBR04_RS26085 | 4943281..4943655 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| DBR04_RS26090 | 4943794..4944024 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DBR04_RS26095 | 4944126..4944782 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| DBR04_RS26100 | 4944806..4945468 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T78717 NZ_CP022229:c4941893-4941790 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT78717 NZ_CP022229:4941752-4942023 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
