Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4131993..4132138 | Replicon | chromosome |
| Accession | NZ_CP021939 | ||
| Organism | Klebsiella pneumoniae strain AR_0145 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4132000..4132102 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4131993..4132138 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM392_RS20755 | 4127524..4128957 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM392_RS20760 | 4129073..4129312 | + | 240 | WP_002911393.1 | YebV family protein | - |
| AM392_RS20765 | 4129410..4129601 | + | 192 | WP_002911395.1 | YebW family protein | - |
| AM392_RS20770 | 4129598..4130251 | - | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| AM392_RS20775 | 4130408..4131376 | + | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| AM392_RS28460 | 4131481..4131624 | + | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| - | 4131993..4132138 | + | 146 | - | - | Antitoxin |
| - | 4132000..4132102 | - | 103 | - | - | Toxin |
| AM392_RS20785 | 4132261..4132599 | - | 339 | WP_002911404.1 | YebY family protein | - |
| AM392_RS20790 | 4132616..4133485 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| AM392_RS20795 | 4133489..4133863 | - | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| AM392_RS20800 | 4133976..4134206 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| AM392_RS20805 | 4134285..4134944 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| AM392_RS20810 | 4134948..4137008 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T77935 NZ_CP021939:c4132102-4132000 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT77935 NZ_CP021939:4131993-4132138 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
