Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1096742..1096941 | Replicon | chromosome |
| Accession | NZ_CP021902 | ||
| Organism | Enterobacter cloacae complex sp. strain AR_0136 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1096745..1096848 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1096742..1096941 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM383_RS06270 (AM383_06200) | 1093000..1094448 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM383_RS06275 (AM383_06205) | 1094555..1094794 | + | 240 | WP_003859885.1 | YebV family protein | - |
| AM383_RS06280 (AM383_06210) | 1094829..1095473 | - | 645 | WP_023324865.1 | protein-serine/threonine phosphatase | - |
| AM383_RS06285 (AM383_06215) | 1095641..1096621 | + | 981 | WP_003859879.1 | VirK/YbjX family protein | - |
| AM383_RS06290 (AM383_06220) | 1096667..1096864 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1096742..1096941 | + | 200 | - | - | Antitoxin |
| - | 1096745..1096848 | - | 104 | - | - | Toxin |
| AM383_RS06295 (AM383_06225) | 1096990..1097328 | - | 339 | WP_032609509.1 | YebY family protein | - |
| AM383_RS06300 (AM383_06230) | 1097345..1098214 | - | 870 | WP_022651438.1 | copper homeostasis membrane protein CopD | - |
| AM383_RS06305 (AM383_06235) | 1098216..1098587 | - | 372 | WP_023314337.1 | CopC domain-containing protein YobA | - |
| AM383_RS06310 (AM383_06240) | 1098725..1098955 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| AM383_RS06315 (AM383_06245) | 1099067..1099717 | + | 651 | WP_032609512.1 | carbon-nitrogen hydrolase family protein | - |
| AM383_RS06320 (AM383_06250) | 1099742..1100404 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T77809 NZ_CP021902:c1096848-1096745 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT77809 NZ_CP021902:1096742-1096941 [Enterobacter cloacae complex sp.]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
