Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 318997..319595 | Replicon | plasmid psymA |
| Accession | NZ_CP021813 | ||
| Organism | Sinorhizobium meliloti strain M270 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | Q930F0 |
| Locus tag | CDO26_RS19775 | Protein ID | WP_010967243.1 |
| Coordinates | 318997..319290 (-) | Length | 98 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Q930F1 |
| Locus tag | CDO26_RS19780 | Protein ID | WP_010967242.1 |
| Coordinates | 319287..319595 (-) | Length | 103 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO26_RS19760 (CDO26_19775) | 315221..315997 | + | 777 | WP_014528764.1 | histidinol-phosphatase | - |
| CDO26_RS39910 | 316375..316632 | - | 258 | WP_280641010.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| CDO26_RS19765 (CDO26_19780) | 316566..317126 | - | 561 | WP_280640970.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| CDO26_RS19770 (CDO26_19785) | 317536..318735 | + | 1200 | WP_164820707.1 | NAD-dependent formate dehydrogenase | - |
| CDO26_RS19775 (CDO26_19790) | 318997..319290 | - | 294 | WP_010967243.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| CDO26_RS19780 (CDO26_19795) | 319287..319595 | - | 309 | WP_010967242.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| CDO26_RS39915 | 319790..320116 | - | 327 | WP_280640959.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| CDO26_RS39920 | 320053..320376 | - | 324 | WP_272951509.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| CDO26_RS39925 | 320373..320741 | - | 369 | WP_127652986.1 | ParB/RepB/Spo0J family partition protein | - |
| CDO26_RS19805 (CDO26_19810) | 320880..321080 | + | 201 | Protein_348 | hypothetical protein | - |
| CDO26_RS19810 (CDO26_19815) | 321111..321470 | + | 360 | WP_014989665.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CDO26_RS19815 (CDO26_19820) | 321460..321783 | + | 324 | WP_003526806.1 | DNA-binding transcriptional regulator | - |
| CDO26_RS19820 (CDO26_19825) | 321974..323500 | - | 1527 | WP_088197686.1 | amidohydrolase | - |
| CDO26_RS19825 (CDO26_19830) | 323497..324435 | - | 939 | WP_088197687.1 | nucleoside hydrolase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | htpB | 1..1454983 | 1454983 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 a.a. Molecular weight: 11278.93 Da Isoelectric Point: 6.4734
>T77498 WP_010967243.1 NZ_CP021813:c319290-318997 [Sinorhizobium meliloti]
MRLVWARYALDDRDTIFSYIERENPRAAVHVDEEIVSAVRRLLDFPESGRPGRIAGTRELVIPRTPYIAAYMVMEDRIRI
LRVLHGAQKWPSELDDG
MRLVWARYALDDRDTIFSYIERENPRAAVHVDEEIVSAVRRLLDFPESGRPGRIAGTRELVIPRTPYIAAYMVMEDRIRI
LRVLHGAQKWPSELDDG
Download Length: 294 bp
>T77498 NZ_CP021813:c319290-318997 [Sinorhizobium meliloti]
ATGAGGCTCGTCTGGGCGCGATATGCGCTTGACGATCGCGACACCATCTTCAGTTACATCGAAAGGGAGAATCCGAGGGC
GGCGGTCCACGTCGACGAGGAGATCGTCAGCGCGGTACGTCGTCTGCTTGATTTTCCGGAAAGCGGCCGCCCTGGCCGGA
TTGCCGGAACTCGAGAGCTTGTTATCCCTCGGACCCCCTACATTGCAGCCTACATGGTAATGGAGGATAGAATTCGAATT
CTGCGTGTCCTGCACGGCGCCCAGAAGTGGCCCAGCGAGCTCGACGACGGGTAG
ATGAGGCTCGTCTGGGCGCGATATGCGCTTGACGATCGCGACACCATCTTCAGTTACATCGAAAGGGAGAATCCGAGGGC
GGCGGTCCACGTCGACGAGGAGATCGTCAGCGCGGTACGTCGTCTGCTTGATTTTCCGGAAAGCGGCCGCCCTGGCCGGA
TTGCCGGAACTCGAGAGCTTGTTATCCCTCGGACCCCCTACATTGCAGCCTACATGGTAATGGAGGATAGAATTCGAATT
CTGCGTGTCCTGCACGGCGCCCAGAAGTGGCCCAGCGAGCTCGACGACGGGTAG
Antitoxin
Download Length: 103 a.a. Molecular weight: 11210.58 Da Isoelectric Point: 5.6604
>AT77498 WP_010967242.1 NZ_CP021813:c319595-319287 [Sinorhizobium meliloti]
MASNALVQTRIDAEVKERATAVLENMGLTVSDAVRILLTRTANEGALPLELFSHSEAHDAWFRAKVLRALEDTRPDVDDA
DADAHFRERRAAALRKAAAGDR
MASNALVQTRIDAEVKERATAVLENMGLTVSDAVRILLTRTANEGALPLELFSHSEAHDAWFRAKVLRALEDTRPDVDDA
DADAHFRERRAAALRKAAAGDR
Download Length: 309 bp
>AT77498 NZ_CP021813:c319595-319287 [Sinorhizobium meliloti]
ATGGCTTCAAATGCACTTGTTCAGACTCGAATCGATGCCGAGGTCAAAGAGCGCGCCACGGCGGTTTTAGAGAACATGGG
TCTGACGGTCTCGGACGCTGTTCGAATCCTGTTAACTCGGACGGCGAATGAGGGCGCCCTGCCGCTGGAACTCTTCAGCC
ACAGCGAGGCGCACGACGCTTGGTTCCGCGCCAAAGTGTTGCGGGCACTCGAGGATACCCGACCCGACGTCGACGATGCC
GACGCCGATGCGCACTTTCGAGAGCGCCGGGCGGCAGCTTTGCGCAAGGCTGCGGCGGGTGATCGATGA
ATGGCTTCAAATGCACTTGTTCAGACTCGAATCGATGCCGAGGTCAAAGAGCGCGCCACGGCGGTTTTAGAGAACATGGG
TCTGACGGTCTCGGACGCTGTTCGAATCCTGTTAACTCGGACGGCGAATGAGGGCGCCCTGCCGCTGGAACTCTTCAGCC
ACAGCGAGGCGCACGACGCTTGGTTCCGCGCCAAAGTGTTGCGGGCACTCGAGGATACCCGACCCGACGTCGACGATGCC
GACGCCGATGCGCACTTTCGAGAGCGCCGGGCGGCAGCTTTGCGCAAGGCTGCGGCGGGTGATCGATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|