Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/LOTUS_5_Limkain_b1-VagC |
| Location | 219548..220221 | Replicon | chromosome |
| Accession | NZ_CP021812 | ||
| Organism | Sinorhizobium meliloti strain M270 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | CDO26_RS01120 | Protein ID | WP_010969926.1 |
| Coordinates | 219548..219952 (-) | Length | 135 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | H0GA10 |
| Locus tag | CDO26_RS01125 | Protein ID | WP_003536345.1 |
| Coordinates | 219949..220221 (-) | Length | 91 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO26_RS01075 (CDO26_01075) | 215112..215252 | - | 141 | WP_010969932.1 | hemin uptake protein HemP | - |
| CDO26_RS01080 (CDO26_01080) | 215482..215916 | + | 435 | WP_010969931.1 | hypothetical protein | - |
| CDO26_RS01085 (CDO26_01085) | 215957..216883 | + | 927 | WP_010969930.1 | energy transducer TonB | - |
| CDO26_RS01090 (CDO26_01090) | 217091..217504 | + | 414 | WP_003536357.1 | DUF2325 domain-containing protein | - |
| CDO26_RS01095 (CDO26_01095) | 217557..217823 | + | 267 | WP_010969929.1 | hypothetical protein | - |
| CDO26_RS01100 (CDO26_01100) | 217836..218150 | + | 315 | WP_003536354.1 | antibiotic biosynthesis monooxygenase | - |
| CDO26_RS01105 (CDO26_01105) | 218265..218525 | - | 261 | WP_010969928.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CDO26_RS01110 (CDO26_01110) | 218648..219022 | - | 375 | WP_010969927.1 | DUF423 domain-containing protein | - |
| CDO26_RS01115 (CDO26_01115) | 219028..219420 | - | 393 | WP_003536349.1 | globin | - |
| CDO26_RS01120 (CDO26_01120) | 219548..219952 | - | 405 | WP_010969926.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| CDO26_RS01125 (CDO26_01125) | 219949..220221 | - | 273 | WP_003536345.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
| CDO26_RS01130 (CDO26_01130) | 220358..220918 | + | 561 | WP_010969925.1 | TetR/AcrR family transcriptional regulator | - |
| CDO26_RS01135 (CDO26_01135) | 220966..221307 | + | 342 | WP_003536339.1 | SMR family transporter | - |
| CDO26_RS01140 (CDO26_01140) | 221487..222542 | + | 1056 | WP_014529838.1 | dipeptidase | - |
| CDO26_RS01145 (CDO26_01145) | 222590..224230 | + | 1641 | WP_088196805.1 | ABC transporter substrate-binding protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14747.98 Da Isoelectric Point: 5.1974
>T77492 WP_010969926.1 NZ_CP021812:c219952-219548 [Sinorhizobium meliloti]
MNGYLLDTNIISDVIHNPFGPAAQRIERIGPKEIYTSIVVASELRYGCAKKGSAKLLAKVESLLEIVPVLPLDIPADTRY
GSIRAELESLGQTIGSNDLLIAAHAYALDLTLVTDNIREFSRVRGLSLENWLER
MNGYLLDTNIISDVIHNPFGPAAQRIERIGPKEIYTSIVVASELRYGCAKKGSAKLLAKVESLLEIVPVLPLDIPADTRY
GSIRAELESLGQTIGSNDLLIAAHAYALDLTLVTDNIREFSRVRGLSLENWLER
Download Length: 405 bp
>T77492 NZ_CP021812:c219952-219548 [Sinorhizobium meliloti]
TTGAACGGCTATCTTCTCGATACGAACATCATCAGCGACGTCATTCACAATCCGTTCGGACCGGCTGCGCAACGCATCGA
ACGGATCGGCCCGAAGGAGATTTACACCAGCATCGTCGTCGCGTCCGAGTTGCGGTATGGTTGCGCAAAAAAGGGATCGG
CGAAGTTGCTCGCCAAGGTCGAAAGCTTGCTGGAAATCGTCCCGGTGCTGCCATTGGATATTCCGGCCGACACCCGATAT
GGCAGCATTCGTGCGGAATTGGAGTCTCTGGGGCAGACCATCGGCTCCAACGATCTGTTGATTGCCGCGCATGCATATGC
GCTGGACCTGACGCTGGTGACGGACAATATCCGTGAGTTCAGCCGCGTTCGTGGCCTTAGTCTGGAAAACTGGCTTGAGC
GATAG
TTGAACGGCTATCTTCTCGATACGAACATCATCAGCGACGTCATTCACAATCCGTTCGGACCGGCTGCGCAACGCATCGA
ACGGATCGGCCCGAAGGAGATTTACACCAGCATCGTCGTCGCGTCCGAGTTGCGGTATGGTTGCGCAAAAAAGGGATCGG
CGAAGTTGCTCGCCAAGGTCGAAAGCTTGCTGGAAATCGTCCCGGTGCTGCCATTGGATATTCCGGCCGACACCCGATAT
GGCAGCATTCGTGCGGAATTGGAGTCTCTGGGGCAGACCATCGGCTCCAACGATCTGTTGATTGCCGCGCATGCATATGC
GCTGGACCTGACGCTGGTGACGGACAATATCCGTGAGTTCAGCCGCGTTCGTGGCCTTAGTCTGGAAAACTGGCTTGAGC
GATAG
Antitoxin
Download Length: 91 a.a. Molecular weight: 10334.02 Da Isoelectric Point: 6.3950
>AT77492 WP_003536345.1 NZ_CP021812:c220221-219949 [Sinorhizobium meliloti]
MPVPLPSSRPKEVKLFRNNRSQAVRIPAEFELPGDRVLIRREGTRLIIEPIARPADIVELLAEWKKEAPLGPEDRFPDVE
DIPARPEKIF
MPVPLPSSRPKEVKLFRNNRSQAVRIPAEFELPGDRVLIRREGTRLIIEPIARPADIVELLAEWKKEAPLGPEDRFPDVE
DIPARPEKIF
Download Length: 273 bp
>AT77492 NZ_CP021812:c220221-219949 [Sinorhizobium meliloti]
ATGCCCGTCCCGTTGCCGTCATCGCGACCTAAAGAAGTAAAGCTGTTCCGCAATAACCGCAGCCAGGCAGTCCGTATTCC
TGCGGAGTTCGAGTTGCCTGGAGACCGTGTGTTGATCCGTCGCGAAGGAACGAGACTCATTATCGAACCGATAGCCAGGC
CAGCCGATATCGTGGAGCTTCTCGCGGAGTGGAAGAAGGAAGCTCCCCTCGGACCTGAAGACCGGTTCCCGGATGTTGAG
GATATACCCGCCCGGCCGGAGAAAATCTTTTGA
ATGCCCGTCCCGTTGCCGTCATCGCGACCTAAAGAAGTAAAGCTGTTCCGCAATAACCGCAGCCAGGCAGTCCGTATTCC
TGCGGAGTTCGAGTTGCCTGGAGACCGTGTGTTGATCCGTCGCGAAGGAACGAGACTCATTATCGAACCGATAGCCAGGC
CAGCCGATATCGTGGAGCTTCTCGCGGAGTGGAAGAAGGAAGCTCCCCTCGGACCTGAAGACCGGTTCCCGGATGTTGAG
GATATACCCGCCCGGCCGGAGAAAATCTTTTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|