Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1878664..1878932 | Replicon | chromosome |
| Accession | NZ_CP021288 | ||
| Organism | Escherichia coli strain PA45B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1878702..1878804 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1878664..1878932 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PA45B_RS09910 | 1875821..1877260 | + | 1440 | WP_001351128.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PA45B_RS09915 | 1877378..1877614 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| PA45B_RS09920 | 1877719..1877910 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PA45B_RS09925 | 1877911..1878567 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1878664..1878932 | + | 269 | - | - | Antitoxin |
| - | 1878702..1878804 | - | 103 | - | - | Toxin |
| PA45B_RS09930 | 1878962..1879303 | - | 342 | WP_000984819.1 | YebY family protein | - |
| PA45B_RS09935 | 1879316..1880188 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| PA45B_RS09940 | 1880192..1880566 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PA45B_RS09945 | 1880705..1880935 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PA45B_RS09950 | 1881037..1881693 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| PA45B_RS09955 | 1881716..1882378 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76412 NZ_CP021288:c1878804-1878702 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT76412 NZ_CP021288:1878664-1878932 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
