Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 884130..884398 | Replicon | chromosome |
| Accession | NZ_CP021207 | ||
| Organism | Escherichia coli strain strain Z247 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 884168..884270 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 884130..884398 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA270_RS04720 | 881288..882727 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CA270_RS04725 | 882844..883080 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CA270_RS04730 | 883185..883376 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CA270_RS04735 | 883377..884033 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 884130..884398 | + | 269 | - | - | Antitoxin |
| - | 884168..884270 | - | 103 | - | - | Toxin |
| CA270_RS04740 | 884428..884769 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CA270_RS04745 | 884782..885654 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| CA270_RS04750 | 885658..886032 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CA270_RS04755 | 886171..886401 | + | 231 | WP_086353137.1 | DNA polymerase III subunit theta | - |
| CA270_RS04760 | 886503..887159 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| CA270_RS04765 | 887183..887845 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T76282 NZ_CP021207:c884270-884168 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT76282 NZ_CP021207:884130-884398 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
