Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1988119..1988390 | Replicon | chromosome |
| Accession | NZ_CP020543 | ||
| Organism | Escherichia coli C | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1988249..1988352 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1988119..1988390 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B6N50_RS10040 (B6N50_10040) | 1984674..1985336 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| B6N50_RS10045 (B6N50_10045) | 1985360..1986016 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| B6N50_RS10050 (B6N50_10050) | 1986118..1986348 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| B6N50_RS10055 (B6N50_10055) | 1986487..1986861 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| B6N50_RS10060 (B6N50_10060) | 1986865..1987737 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| B6N50_RS10065 (B6N50_10065) | 1987750..1988091 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1988119..1988390 | - | 272 | - | - | Antitoxin |
| - | 1988249..1988352 | + | 104 | - | - | Toxin |
| B6N50_RS10070 (B6N50_10070) | 1988487..1989143 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| B6N50_RS10075 (B6N50_10075) | 1989144..1989335 | - | 192 | WP_001338167.1 | YebW family protein | - |
| B6N50_RS10080 (B6N50_10080) | 1989440..1989676 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| B6N50_RS10085 (B6N50_10085) | 1989794..1991233 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T75063 NZ_CP020543:1988249-1988352 [Escherichia coli C]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT75063 NZ_CP020543:c1988390-1988119 [Escherichia coli C]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
