Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2085552..2085692 | Replicon | chromosome |
| Accession | NZ_CP020507 | ||
| Organism | Serratia marcescens strain BWH-35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2085596..2085692 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2085552..2085692 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AS658_RS10160 | 2080753..2081178 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| AS658_RS10165 | 2081373..2082326 | + | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| AS658_RS10170 | 2082360..2082590 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| AS658_RS10175 | 2082931..2083449 | + | 519 | WP_038875847.1 | non-heme ferritin | - |
| AS658_RS10180 | 2083743..2084159 | + | 417 | WP_048233438.1 | CopC domain-containing protein YobA | - |
| AS658_RS10185 | 2084162..2085043 | + | 882 | WP_048233440.1 | copper homeostasis membrane protein CopD | - |
| AS658_RS10190 | 2085113..2085454 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2085552..2085692 | - | 141 | - | - | Antitoxin |
| - | 2085596..2085692 | + | 97 | - | - | Toxin |
| AS658_RS10195 | 2086113..2086442 | - | 330 | WP_038875697.1 | DUF1493 family protein | - |
| AS658_RS10200 | 2086436..2086894 | - | 459 | WP_048233442.1 | hypothetical protein | - |
| AS658_RS10205 | 2087298..2087597 | - | 300 | WP_181423508.1 | hypothetical protein | - |
| AS658_RS10215 | 2088267..2088617 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| AS658_RS10220 | 2088668..2088970 | - | 303 | WP_038875692.1 | hypothetical protein | - |
| AS658_RS10225 | 2089257..2090456 | + | 1200 | WP_047727768.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T74847 NZ_CP020507:2085596-2085692 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT74847 NZ_CP020507:c2085692-2085552 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
