Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2121812..2121880 | Replicon | chromosome |
| Accession | NZ_CP019953 | ||
| Organism | Escherichia coli M8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2121850..2121880 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2121812..2121880 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B2H83_RS10380 | 2118969..2120408 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| B2H83_RS10385 | 2120526..2120762 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| B2H83_RS10390 | 2120867..2121058 | + | 192 | WP_001296140.1 | YebW family protein | - |
| B2H83_RS10395 | 2121059..2121715 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2121812..2121880 | + | 69 | - | - | Antitoxin |
| - | 2121850..2121880 | - | 31 | - | - | Toxin |
| B2H83_RS10400 | 2123615..2123797 | - | 183 | WP_077897940.1 | DUF1353 domain-containing protein | - |
| B2H83_RS10405 | 2124083..2124466 | - | 384 | WP_061892726.1 | DUF1353 domain-containing protein | - |
| B2H83_RS10410 | 2124459..2125025 | - | 567 | WP_129541906.1 | DUF4376 domain-containing protein | - |
| B2H83_RS10415 | 2125009..2126667 | - | 1659 | WP_129542089.1 | exosporium protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2105973..2177260 | 71287 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
