Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1960633..1960901 Replicon chromosome
Accession NZ_CP019777
Organism Escherichia coli NU14

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1960671..1960773 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1960633..1960901 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
B0908_RS10350 1957790..1959229 + 1440 WP_001350670.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
B0908_RS10355 1959347..1959583 + 237 WP_001295499.1 DUF1480 family protein -
B0908_RS10360 1959688..1959879 + 192 WP_001296140.1 YebW family protein -
B0908_RS10365 1959880..1960536 - 657 WP_000812741.1 protein-serine/threonine phosphatase -
- 1960633..1960901 + 269 - - Antitoxin
- 1960671..1960773 - 103 - - Toxin
B0908_RS10375 1960931..1961272 - 342 WP_000984819.1 YebY family protein -
B0908_RS10380 1961285..1962157 - 873 WP_000879320.1 copper homeostasis membrane protein CopD -
B0908_RS10385 1962161..1962535 - 375 WP_000168747.1 CopC domain-containing protein YobA -
B0908_RS10390 1962674..1962904 + 231 WP_000916763.1 DNA polymerase III subunit theta -
B0908_RS10395 1963006..1963662 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
B0908_RS10400 1963685..1964347 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T73252 NZ_CP019777:c1960773-1960671 [Escherichia coli NU14]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT73252 NZ_CP019777:1960633-1960901 [Escherichia coli NU14]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References