Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3794766..3795037 | Replicon | chromosome |
| Accession | NZ_CP019271 | ||
| Organism | Escherichia coli strain 13P460A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3794896..3794999 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3794766..3795037 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BWI88_RS19340 | 3791321..3791983 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BWI88_RS19345 | 3792007..3792663 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| BWI88_RS19350 | 3792765..3792995 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BWI88_RS19355 | 3793134..3793508 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BWI88_RS19360 | 3793512..3794384 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| BWI88_RS19365 | 3794397..3794738 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3794766..3795037 | - | 272 | - | - | Antitoxin |
| - | 3794896..3794999 | + | 104 | - | - | Toxin |
| BWI88_RS19370 | 3795134..3795790 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| BWI88_RS19375 | 3795791..3795982 | - | 192 | WP_001296140.1 | YebW family protein | - |
| BWI88_RS19380 | 3796087..3796323 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BWI88_RS19385 | 3796441..3797880 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T72122 NZ_CP019271:3794896-3794999 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT72122 NZ_CP019271:c3795037-3794766 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
