Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/Tad-HTH_37
Location 5459055..5459764 Replicon chromosome
Accession NZ_CP019082
Organism Paludisphaera borealis strain PX4

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag BSF38_RS21045 Protein ID WP_076348936.1
Coordinates 5459375..5459764 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag BSF38_RS21040 Protein ID WP_076348934.1
Coordinates 5459055..5459378 (-) Length 108 a.a.

Genomic Context

BSF38_RS21025BSF38_RS21030BSF38_RS21035BSF38_RS21040BSF38_RS21045BSF38_RS21050BSF38_RS21055BSF38_RS21060
Location: 5455976..5456905 (930 bp)
Type: Others
Protein ID: WP_076348928.1
Location: 5456940..5458616 (1677 bp)
Type: Others
Protein ID: WP_076348930.1
Location: 5458634..5458921 (288 bp)
Type: Others
Protein ID: WP_076348932.1
Location: 5459055..5459378 (324 bp)
Type: Antitoxin
Protein ID: WP_076348934.1
Location: 5459375..5459764 (390 bp)
Type: Toxin
Protein ID: WP_076348936.1
Location: 5459850..5461241 (1392 bp)
Type: Others
Protein ID: WP_076351237.1
Location: 5461247..5463400 (2154 bp)
Type: Others
Protein ID: WP_076351239.1
Location: 5463607..5464233 (627 bp)
Type: Others
Protein ID: WP_076348938.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
BSF38_RS210255455976..5456905+930WP_076348928.1ABC transporter ATP-binding protein-
BSF38_RS210305456940..5458616+1677WP_076348930.1ABC transporter permease subunit-
BSF38_RS210355458634..5458921-288WP_076348932.1hypothetical protein-
BSF38_RS210405459055..5459378-324WP_076348934.1helix-turn-helix domain-containing proteinAntitoxin
BSF38_RS210455459375..5459764-390WP_076348936.1type II toxin-antitoxin system RelE/ParE family toxinToxin
BSF38_RS210505459850..5461241-1392WP_076351237.1DUF1501 domain-containing protein-
BSF38_RS210555461247..5463400-2154WP_076351239.1DUF1549 and DUF1553 domain-containing protein-
BSF38_RS210605463607..5464233-627WP_076348938.1UbiX family flavin prenyltransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(22-114)

Antitoxin

Cro/C1-type helix-turn-helix domain

(33-84)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 14180.30 Da        Isoelectric Point: 10.1196

>T71714 WP_076348936.1 NZ_CP019082:c5459764-5459375 [Paludisphaera borealis]
MSAGEDKSDAKPLEWVGSSLADLKRLPSAVQRRIGHNLYLVQIDTKPMNAKPLSGFGGASVLEIVEDHGGGTYRAVYTVR
FREAVFVLHVFQKKSKKGIKTPKTDVDLIKARLKTASDLYESLYGGEKS

Download         Length: 390 bp

>T71714 NZ_CP019082:c5459764-5459375 [Paludisphaera borealis]
ATGAGTGCGGGCGAGGACAAATCAGACGCCAAGCCGCTGGAGTGGGTGGGGAGCTCACTGGCCGACCTTAAGAGGCTGCC
TAGCGCTGTCCAGAGGCGGATCGGACACAATTTGTACCTGGTCCAGATCGACACGAAGCCCATGAACGCCAAGCCGCTGT
CGGGCTTCGGCGGCGCGAGCGTCCTTGAGATCGTCGAAGACCACGGCGGCGGCACATACCGCGCGGTGTACACGGTGAGG
TTCCGTGAAGCCGTCTTCGTGCTCCACGTCTTCCAGAAGAAGTCGAAGAAGGGAATCAAGACGCCAAAGACCGACGTCGA
CCTGATCAAGGCGCGATTGAAAACGGCGTCGGACCTGTACGAGTCGCTTTACGGGGGCGAAAAATCATGA

Antitoxin


Download         Length: 108 a.a.        Molecular weight: 11684.51 Da        Isoelectric Point: 11.0436

>AT71714 WP_076348934.1 NZ_CP019082:c5459378-5459055 [Paludisphaera borealis]
MSEPIITRGSTNVFADLGFENAEELLAKSELAAQILKTVRARRLTQAKAGELLGISQPKVSALLNGRLDGFSTDRLFRFL
TKLGWDVQIKLSKAKSKSNGHVRVTSA

Download         Length: 324 bp

>AT71714 NZ_CP019082:c5459378-5459055 [Paludisphaera borealis]
ATGAGCGAGCCCATCATCACTCGCGGCAGCACGAACGTCTTCGCCGACCTGGGGTTCGAGAATGCGGAAGAGTTGCTGGC
CAAGTCCGAACTCGCCGCCCAGATCCTTAAGACCGTCCGCGCCCGGCGGCTGACCCAGGCGAAAGCCGGCGAACTCCTCG
GCATCTCGCAGCCCAAGGTCTCGGCCCTGCTCAACGGCCGACTCGACGGATTCTCGACCGATCGGCTGTTCCGCTTCCTC
ACCAAACTAGGATGGGACGTCCAGATCAAGCTGTCGAAGGCGAAGTCCAAGTCGAACGGCCATGTTCGCGTGACGTCCGC
GTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References