Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1454626..1454894 Replicon chromosome
Accession NZ_CP018983
Organism Escherichia coli strain Ecol_867

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1454664..1454766 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1454626..1454894 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BE928_RS08635 1451784..1453223 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
BE928_RS08640 1453340..1453576 + 237 WP_001295499.1 DUF1480 family protein -
BE928_RS08645 1453681..1453872 + 192 WP_001296140.1 YebW family protein -
BE928_RS08650 1453873..1454529 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1454626..1454894 + 269 - - Antitoxin
- 1454664..1454766 - 103 - - Toxin
BE928_RS08660 1454924..1455265 - 342 WP_000976472.1 YebY family protein -
BE928_RS08665 1455278..1456150 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
BE928_RS08670 1456154..1456528 - 375 WP_000168747.1 CopC domain-containing protein YobA -
BE928_RS08675 1456667..1456897 + 231 WP_000916763.1 DNA polymerase III subunit theta -
BE928_RS08680 1456999..1457655 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
BE928_RS08685 1457679..1458341 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T71232 NZ_CP018983:c1454766-1454664 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT71232 NZ_CP018983:1454626-1454894 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References