Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4334151..4334422 | Replicon | chromosome |
| Accession | NZ_CP018840 | ||
| Organism | Escherichia coli strain KSC64 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4334189..4334292 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4334151..4334422 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BUQ71_RS22075 | 4331308..4332747 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BUQ71_RS22080 | 4332865..4333101 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BUQ71_RS22085 | 4333206..4333397 | + | 192 | WP_000457842.1 | YebW family protein | - |
| BUQ71_RS22090 | 4333398..4334054 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4334151..4334422 | + | 272 | - | - | Antitoxin |
| - | 4334189..4334292 | - | 104 | - | - | Toxin |
| BUQ71_RS22095 | 4334450..4334791 | - | 342 | WP_000976492.1 | YebY family protein | - |
| BUQ71_RS22100 | 4334804..4335676 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| BUQ71_RS22105 | 4335680..4336054 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| BUQ71_RS22110 | 4336193..4336423 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BUQ71_RS22115 | 4336525..4337181 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BUQ71_RS22120 | 4337205..4337867 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T70677 NZ_CP018840:c4334292-4334189 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT70677 NZ_CP018840:4334151-4334422 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
