Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1946547..1946692 | Replicon | chromosome |
| Accession | NZ_CP018438 | ||
| Organism | Klebsiella pneumoniae strain Kp_Goe_822917 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1946583..1946685 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1946547..1946692 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BB746_RS09910 | 1941677..1943737 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BB746_RS09920 | 1943741..1944400 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| BB746_RS09925 | 1944479..1944709 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BB746_RS09930 | 1944822..1945196 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BB746_RS09935 | 1945200..1946069 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| BB746_RS09940 | 1946086..1946424 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1946547..1946692 | - | 146 | - | - | Antitoxin |
| - | 1946583..1946685 | + | 103 | - | - | Toxin |
| BB746_RS30245 | 1947060..1947203 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| BB746_RS09955 | 1947308..1948276 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| BB746_RS09960 | 1948433..1949086 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BB746_RS09965 | 1949083..1949274 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BB746_RS09970 | 1949372..1949611 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BB746_RS09975 | 1949727..1951160 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T69996 NZ_CP018438:1946583-1946685 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT69996 NZ_CP018438:c1946692-1946547 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
