Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3308144..3308415 | Replicon | chromosome |
| Accession | NZ_CP017844 | ||
| Organism | Escherichia coli strain FMU073332 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3308274..3308377 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3308144..3308415 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLJ80_RS17905 | 3304699..3305361 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| BLJ80_RS17910 | 3305385..3306041 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BLJ80_RS17915 | 3306143..3306373 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BLJ80_RS17920 | 3306512..3306886 | + | 375 | WP_000168746.1 | CopC domain-containing protein YobA | - |
| BLJ80_RS17925 | 3306890..3307762 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| BLJ80_RS17930 | 3307775..3308116 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3308144..3308415 | - | 272 | - | - | Antitoxin |
| - | 3308274..3308377 | + | 104 | - | - | Toxin |
| BLJ80_RS17940 | 3308512..3309168 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| BLJ80_RS17945 | 3309169..3309360 | - | 192 | WP_001338167.1 | YebW family protein | - |
| BLJ80_RS17950 | 3309465..3309701 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| BLJ80_RS17955 | 3309819..3311258 | - | 1440 | WP_001397399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T68202 NZ_CP017844:3308274-3308377 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT68202 NZ_CP017844:c3308415-3308144 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
