Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 3726600..3727274 Replicon chromosome
Accession NZ_CP017594
Organism Mycobacterium tuberculosis strain Beijing-like/36918

Toxin (Protein)


Gene name vapC Uniprot ID P9WF52
Locus tag BJM00_RS18250 Protein ID WP_003417282.1
Coordinates 3726600..3727028 (-) Length 143 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TI59
Locus tag BJM00_RS18255 Protein ID WP_003417286.1
Coordinates 3727032..3727274 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BJM00_RS18225 3722422..3722823 - 402 WP_003417264.1 cytidine deaminase -
BJM00_RS18230 3722964..3723398 + 435 WP_003900017.1 succinate dehydrogenase, cytochrome b556 subunit -
BJM00_RS18235 3723395..3723829 + 435 WP_003902441.1 succinate dehydrogenase hydrophobic membrane anchor subunit -
BJM00_RS18240 3723958..3725730 + 1773 WP_003417273.1 succinate dehydrogenase flavoprotein subunit -
BJM00_RS18245 3725730..3726521 + 792 WP_003417279.1 succinate dehydrogenase iron-sulfur subunit -
BJM00_RS18250 3726600..3727028 - 429 WP_003417282.1 type II toxin-antitoxin system VapC family toxin Toxin
BJM00_RS18255 3727032..3727274 - 243 WP_003417286.1 ribbon-helix-helix domain-containing protein Antitoxin
BJM00_RS18260 3727396..3728010 - 615 WP_003417288.1 class I SAM-dependent methyltransferase -
BJM00_RS18265 3728007..3728672 - 666 WP_003417290.1 molybdopterin converting factor subunit 1 -
BJM00_RS18270 3728673..3729206 - 534 WP_003417293.1 cyclic pyranopterin monophosphate synthase MoaC -
BJM00_RS18275 3729203..3729577 - 375 WP_003417295.1 4a-hydroxytetrahydrobiopterin dehydratase -
BJM00_RS18280 3729674..3730738 - 1065 WP_003913037.1 GTP 3',8-cyclase MoaA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-141)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 143 a.a.        Molecular weight: 15834.16 Da        Isoelectric Point: 8.5471

>T67554 WP_003417282.1 NZ_CP017594:c3727028-3726600 [Mycobacterium tuberculosis]
MRALLDVNVLLALLDRDHVDHERARAWITGQIERGWASCAITQNGFVRVISQPRYPSPISVAHAIDLLARATHTRYHEFW
SCTVSILDSKVIDRSRLHSPKQVTDAYLLALAVAHDGRFVTFDQSIALTAVPGATKQHLATL

Download         Length: 429 bp

>T67554 NZ_CP017594:c3727028-3726600 [Mycobacterium tuberculosis]
ATGCGAGCGCTGTTGGACGTCAACGTGCTACTGGCGCTGTTGGACCGCGATCACGTCGACCACGAGCGCGCCCGAGCGTG
GATCACCGGGCAGATCGAGCGGGGATGGGCTTCCTGTGCGATCACCCAAAACGGGTTCGTCCGCGTCATCAGCCAACCGC
GCTATCCCAGCCCAATCTCGGTAGCCCATGCCATCGACTTGTTGGCTCGTGCGACGCACACGCGCTATCACGAGTTCTGG
TCCTGCACCGTCAGCATTCTCGACTCAAAGGTCATCGATCGTTCCCGCCTGCACAGCCCCAAACAGGTCACCGACGCGTA
CTTGCTGGCCCTCGCGGTCGCTCATGATGGCCGATTTGTCACCTTCGATCAGTCGATTGCGTTGACTGCGGTTCCTGGCG
CAACCAAACAGCACCTGGCAACGCTGTAG

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8849.86 Da        Isoelectric Point: 5.1007

>AT67554 WP_003417286.1 NZ_CP017594:c3727274-3727032 [Mycobacterium tuberculosis]
MRTTLSIDDDVLLAVKERARREKRTAGEILSDLARQALTNQNPQPAASQEDAFHGFEPLPHRGGAVSNALIDRLRDEEAV

Download         Length: 243 bp

>AT67554 NZ_CP017594:c3727274-3727032 [Mycobacterium tuberculosis]
ATGCGCACCACGTTGTCCATCGACGACGATGTATTGCTGGCCGTGAAGGAACGGGCACGCAGGGAGAAGCGCACCGCGGG
TGAAATCCTGTCGGATCTGGCCCGGCAAGCGTTAACCAACCAGAATCCCCAGCCTGCGGCGAGCCAGGAGGACGCCTTTC
ATGGCTTCGAACCCCTGCCTCATCGCGGTGGAGCGGTATCGAACGCGCTGATCGATCGGCTTCGTGACGAGGAGGCCGTG
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FBL0

Antitoxin

Source ID Structure
AlphaFold DB G0TI59

References