Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Xre
Location 563..1262 Replicon plasmid pDSJ04
Accession NZ_CP017585
Organism Pantoea stewartii subsp. stewartii DC283

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag DSJ_RS23030 Protein ID WP_071988832.1
Coordinates 563..952 (+) Length 130 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag DSJ_RS23035 Protein ID WP_006122463.1
Coordinates 945..1262 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DSJ_RS23030 563..952 + 390 WP_071988832.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DSJ_RS23035 945..1262 + 318 WP_006122463.1 helix-turn-helix domain-containing protein Antitoxin
DSJ_RS23040 1332..1580 + 249 WP_006122464.1 hypothetical protein -
DSJ_RS23045 2122..2514 + 393 WP_044243678.1 hypothetical protein -
DSJ_RS23050 3032..3637 + 606 Protein_5 recombinase family protein -
DSJ_RS23055 3942..4636 + 695 WP_085980093.1 IS1 family transposase -
DSJ_RS23060 4663..5679 + 1017 Protein_7 IS91 family transposase -
DSJ_RS23065 5862..6071 - 210 Protein_8 IS6 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..25681 25681


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-105)

Antitoxin

HigA2-like, helix-turn-helix domain

(12-88)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 16680.65 Da        Isoelectric Point: 12.9106

>T67430 WP_071988832.1 NZ_CP017585:563-952 [Pantoea stewartii subsp. stewartii DC283]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Download         Length: 390 bp

>T67430 NZ_CP017585:563-952 [Pantoea stewartii subsp. stewartii DC283]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 13604.47 Da        Isoelectric Point: 12.8211

>AT67430 WP_006122463.1 NZ_CP017585:945-1262 [Pantoea stewartii subsp. stewartii DC283]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKK

Download         Length: 318 bp

>AT67430 NZ_CP017585:945-1262 [Pantoea stewartii subsp. stewartii DC283]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References