Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2036704..2036849 | Replicon | chromosome |
| Accession | NZ_CP017279 | ||
| Organism | Enterobacter ludwigii strain EN-119 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2036711..2036814 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2036704..2036849 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BH714_RS09565 | 2032548..2032787 | + | 240 | WP_020883412.1 | YebV family protein | - |
| BH714_RS09570 | 2032822..2033466 | - | 645 | Protein_1889 | protein-serine/threonine phosphatase | - |
| BH714_RS09575 | 2033634..2034575 | + | 942 | WP_014170619.1 | VirK/YbjX family protein | - |
| BH714_RS23595 | 2035128..2035386 | + | 259 | Protein_1891 | XRE family transcriptional regulator | - |
| BH714_RS09580 | 2035397..2036263 | + | 867 | WP_020883409.1 | glycosyl transferase family 17 | - |
| - | 2036704..2036849 | + | 146 | - | - | Antitoxin |
| - | 2036711..2036814 | - | 104 | - | - | Toxin |
| BH714_RS09585 | 2036953..2037291 | - | 339 | WP_014170622.1 | YebY family protein | - |
| BH714_RS09590 | 2037308..2038177 | - | 870 | WP_040017778.1 | copper homeostasis membrane protein CopD | - |
| BH714_RS09595 | 2038179..2038550 | - | 372 | WP_020883407.1 | CopC domain-containing protein YobA | - |
| BH714_RS09600 | 2038688..2038918 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| BH714_RS09605 | 2039028..2039678 | + | 651 | WP_040017780.1 | carbon-nitrogen hydrolase family protein | - |
| BH714_RS09610 | 2039703..2040365 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2017217..2057635 | 40418 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66363 NZ_CP017279:c2036814-2036711 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT66363 NZ_CP017279:2036704-2036849 [Enterobacter ludwigii]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
