Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2825604..2825758 | Replicon | chromosome |
| Accession | NZ_CP017181 | ||
| Organism | Enterobacter kobei strain DSM 13645 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2825620..2825723 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2825604..2825758 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFV64_RS13615 | 2821880..2823322 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BFV64_RS13620 | 2823429..2823668 | + | 240 | WP_008500472.1 | YebV family protein | - |
| BFV64_RS13625 | 2823703..2824347 | - | 645 | WP_045134187.1 | protein-serine/threonine phosphatase | - |
| BFV64_RS13630 | 2824515..2825456 | + | 942 | WP_045134188.1 | VirK/YbjX family protein | - |
| - | 2825604..2825758 | + | 155 | - | - | Antitoxin |
| - | 2825620..2825723 | - | 104 | - | - | Toxin |
| BFV64_RS13635 | 2825862..2826200 | - | 339 | WP_014884299.1 | YebY family protein | - |
| BFV64_RS13640 | 2826217..2827086 | - | 870 | WP_045134189.1 | copper homeostasis membrane protein CopD | - |
| BFV64_RS13645 | 2827088..2827459 | - | 372 | WP_023338431.1 | CopC domain-containing protein YobA | - |
| BFV64_RS13650 | 2827597..2827827 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| BFV64_RS13655 | 2827938..2828588 | + | 651 | WP_069602188.1 | carbon-nitrogen hydrolase family protein | - |
| BFV64_RS13660 | 2828613..2829275 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2808954..2848086 | 39132 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66157 NZ_CP017181:c2825723-2825620 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT66157 NZ_CP017181:2825604-2825758 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
