Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2708202..2708403 | Replicon | chromosome |
| Accession | NZ_CP017180 | ||
| Organism | Enterobacter hormaechei subsp. oharae strain DSM 16687 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2708295..2708398 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2708202..2708403 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFV66_RS13000 | 2704740..2705402 | - | 663 | WP_047051600.1 | exodeoxyribonuclease X | - |
| BFV66_RS13005 | 2705427..2706077 | - | 651 | WP_048982489.1 | carbon-nitrogen hydrolase family protein | - |
| BFV66_RS13010 | 2706189..2706419 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| BFV66_RS13015 | 2706557..2706928 | + | 372 | WP_047051768.1 | CopC domain-containing protein YobA | - |
| BFV66_RS13020 | 2706930..2707799 | + | 870 | WP_048982486.1 | copper homeostasis membrane protein CopD | - |
| BFV66_RS13025 | 2707816..2708154 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2708202..2708403 | - | 202 | - | - | Antitoxin |
| BFV66_RS23105 | 2708279..2708476 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2708295..2708398 | + | 104 | - | - | Toxin |
| BFV66_RS13030 | 2708522..2709502 | - | 981 | WP_047051764.1 | VirK/YbjX family protein | - |
| BFV66_RS13035 | 2709670..2710314 | + | 645 | WP_047051763.1 | protein-serine/threonine phosphatase | - |
| BFV66_RS13040 | 2710349..2710588 | - | 240 | WP_006811010.1 | YebV family protein | - |
| BFV66_RS13045 | 2710695..2712143 | - | 1449 | WP_196362492.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T66144 NZ_CP017180:2708295-2708398 [Enterobacter hormaechei subsp. oharae]
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT66144 NZ_CP017180:c2708403-2708202 [Enterobacter hormaechei subsp. oharae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCCTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
