Detailed information of TA system TA064469

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-StbC
• Location: 1504811..1505472
• Replicon: chromosome
• Accession: NZ_CP016342
• Organism: Bordetella parapertussis strain H904

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: Q7WAH5
• Locus tag: BBB43_RS07025
• Protein ID: WP_003812073.1
• Coordinates: 1504811..1505236 (-)
• Length: 142 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: BBB43_RS07030
• Protein ID: WP_003812071.1
• Coordinates: 1505233..1505472 (-)
• Length: 80 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
BBB43_RS07005	1500625..1501602	+	978	WP_003812083.1	tripartite tricarboxylate transporter substrate binding protein	-
BBB43_RS07010	1501623..1502135	-	513	WP_010928017.1	hypothetical protein	-
BBB43_RS07015	1502634..1504139	+	1506	WP_010928018.1	tripartite tricarboxylate transporter permease	-
BBB43_RS07020	1504237..1504701	-	465	WP_003812075.1	MarR family transcriptional regulator	-
BBB43_RS07025	1504811..1505236	-	426	WP_003812073.1	PIN domain-containing protein	Toxin
BBB43_RS07030	1505233..1505472	-	240	WP_003812071.1	Arc family DNA-binding protein	Antitoxin
BBB43_RS07035	1505546..1506388	-	843	WP_010928019.1	AraC family transcriptional regulator	-
BBB43_RS07040	1506526..1507071	+	546	WP_010928020.1	peroxidase-related enzyme	-
BBB43_RS07045	1507130..1507642	+	513	WP_003812062.1	redoxin domain-containing protein	-
BBB43_RS07050	1507723..1507956	+	234	WP_033447224.1	DUF2945 domain-containing protein	-
BBB43_RS07055	1507953..1508513	+	561	WP_010928021.1	DUF488 domain-containing protein	-
BBB43_RS07060	1508591..1509637	+	1047	WP_010928022.1	Dyp-type peroxidase	-
BBB43_RS07065	1509634..1510437	+	804	WP_003812055.1	bacteriocin family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-121)

Antitoxin

• Arc-like DNA binding domain (9-46)

Sequences

Toxin

Protein

• Length: 142 a.a.
• Molecular weight: 14811.22 Da
• Isoelectric Point: 6.3704

>T64469 WP_003812073.1 NZ_CP016342:c1505236-1504811 [Bordetella parapertussis]
MILLDTDVLLEPLRPAPDPAVAAWLDAQHVETLYLAAPGAAEIQLGLARLPRGKRAEALRHEFERRVLPLFMGHVLPFDT
AAADAYAAVMMRAAAAGHALCAIDGCIAAIATAHGLAIATRHPARFEAAGLAAVDPWHAAA

Nucleotide

• Length: 426 bp

>T64469 NZ_CP016342:c1505236-1504811 [Bordetella parapertussis]
ATGATCCTGCTCGACACCGACGTGCTGCTCGAGCCGCTGCGGCCGGCCCCCGACCCGGCCGTCGCGGCATGGCTGGATGC
CCAGCACGTCGAAACCCTGTACCTGGCCGCGCCCGGCGCGGCCGAAATCCAGCTCGGGCTGGCCCGCCTGCCGCGCGGCA
AGCGGGCCGAGGCCTTGCGCCACGAATTCGAGCGGCGCGTCCTGCCGCTGTTCATGGGCCATGTCCTGCCCTTCGACACG
GCCGCGGCCGATGCCTACGCCGCCGTCATGATGCGGGCCGCGGCGGCGGGCCATGCGCTGTGCGCAATCGATGGTTGCAT
CGCCGCCATCGCCACCGCGCACGGCCTGGCCATCGCCACGCGCCATCCGGCCAGGTTCGAGGCGGCCGGGCTCGCCGCCG
TCGATCCCTGGCACGCCGCCGCTTGA

Antitoxin

Protein

• Length: 80 a.a.
• Molecular weight: 8561.78 Da
• Isoelectric Point: 11.5658

>AT64469 WP_003812071.1 NZ_CP016342:c1505472-1505233 [Bordetella parapertussis]
VSSITVRNVPEEVHRALRVRAATHGRSTEAEIRAILENAVLPDGRVKLGTLLSHIGRGARGMDLTIERNPAPARPASFE

Nucleotide

• Length: 240 bp

>AT64469 NZ_CP016342:c1505472-1505233 [Bordetella parapertussis]
GTGTCTTCGATTACGGTAAGAAATGTTCCCGAGGAAGTGCATCGCGCCTTGCGCGTACGCGCGGCCACGCATGGGCGCAG
CACCGAGGCCGAGATCCGCGCCATCCTGGAAAACGCCGTGCTGCCCGATGGCCGCGTCAAGCTGGGCACCCTGCTCAGCC
ACATCGGCCGCGGCGCGCGCGGCATGGACCTGACCATCGAGCGCAATCCGGCGCCCGCTCGCCCGGCCAGCTTCGAATGA

Structures

Toxin

• AlphaFold DB: Q7WAH5