Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 199650..199814 | Replicon | chromosome |
| Accession | NZ_CP016337 | ||
| Organism | Kosakonia sacchari strain BO-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 199709..199812 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 199650..199814 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BBB57_RS01010 | 194849..196924 | + | 2076 | WP_065368197.1 | oligopeptidase B | - |
| BBB57_RS01015 | 196906..197568 | - | 663 | WP_017456948.1 | exodeoxyribonuclease X | - |
| BBB57_RS01020 | 197580..197810 | - | 231 | WP_017456949.1 | DNA polymerase III subunit theta | - |
| BBB57_RS01025 | 197948..198322 | + | 375 | WP_065368198.1 | CopC domain-containing protein YobA | - |
| BBB57_RS01030 | 198326..199195 | + | 870 | WP_017456951.1 | copper homeostasis membrane protein CopD | - |
| BBB57_RS01035 | 199214..199552 | + | 339 | WP_065370595.1 | YebY family protein | - |
| - | 199650..199814 | - | 165 | - | - | Antitoxin |
| - | 199709..199812 | + | 104 | - | - | Toxin |
| BBB57_RS01040 | 199890..200975 | - | 1086 | WP_065368199.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| BBB57_RS23210 | 200944..201216 | - | 273 | WP_006622866.1 | excisionase | - |
| BBB57_RS01045 | 201712..201933 | - | 222 | WP_065368200.1 | TraR/DksA family transcriptional regulator | - |
| BBB57_RS01050 | 201930..202535 | - | 606 | WP_065368201.1 | hypothetical protein | - |
| BBB57_RS01055 | 202532..202756 | - | 225 | WP_065368202.1 | hypothetical protein | - |
| BBB57_RS01060 | 202756..203421 | - | 666 | WP_065368203.1 | DNA methyltransferase | - |
| BBB57_RS24255 | 203418..203582 | - | 165 | WP_197511282.1 | hypothetical protein | - |
| BBB57_RS01065 | 203579..204010 | - | 432 | WP_065368204.1 | regulator | - |
| BBB57_RS01070 | 204007..204687 | - | 681 | WP_065368205.1 | YqaJ viral recombinase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 193269..264510 | 71241 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T64450 NZ_CP016337:199709-199812 [Kosakonia sacchari]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 165 bp
>AT64450 NZ_CP016337:c199814-199650 [Kosakonia sacchari]
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAG
AAAAA
ATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAG
AAAAA
