Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2373245..2373516 | Replicon | chromosome |
| Accession | NZ_CP015832 | ||
| Organism | Escherichia coli O157 strain 180-PT54 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2373375..2373478 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2373245..2373516 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A8L39_RS12330 | 2369800..2370462 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| A8L39_RS12335 | 2370486..2371142 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| A8L39_RS12340 | 2371244..2371474 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| A8L39_RS12345 | 2371613..2371987 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| A8L39_RS12350 | 2371991..2372863 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| A8L39_RS12355 | 2372876..2373217 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2373245..2373516 | - | 272 | - | - | Antitoxin |
| - | 2373375..2373478 | + | 104 | - | - | Toxin |
| A8L39_RS12365 | 2373613..2374269 | + | 657 | WP_032106700.1 | protein-serine/threonine phosphatase | - |
| A8L39_RS12370 | 2374270..2374461 | - | 192 | WP_001296140.1 | YebW family protein | - |
| A8L39_RS12375 | 2374566..2374802 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| A8L39_RS12380 | 2374920..2376359 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T63569 NZ_CP015832:2373375-2373478 [Escherichia coli O157]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT63569 NZ_CP015832:c2373516-2373245 [Escherichia coli O157]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
