Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1977751..1978019 Replicon chromosome
Accession NZ_CP014316
Organism Escherichia coli JJ1887

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1977789..1977891 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1977751..1978019 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AX202_RS10075 1974909..1976348 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
AX202_RS10080 1976465..1976701 + 237 WP_001295499.1 DUF1480 family protein -
AX202_RS10085 1976806..1976997 + 192 WP_001296140.1 YebW family protein -
AX202_RS10090 1976998..1977654 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 1977751..1978019 + 269 - - Antitoxin
- 1977789..1977891 - 103 - - Toxin
AX202_RS10100 1978049..1978390 - 342 WP_000976472.1 YebY family protein -
AX202_RS10105 1978403..1979275 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
AX202_RS10110 1979279..1979653 - 375 WP_000168747.1 CopC domain-containing protein YobA -
AX202_RS10115 1979792..1980022 + 231 WP_000916763.1 DNA polymerase III subunit theta -
AX202_RS10120 1980124..1980780 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
AX202_RS10125 1980804..1981466 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T60701 NZ_CP014316:c1977891-1977789 [Escherichia coli JJ1887]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT60701 NZ_CP014316:1977751-1978019 [Escherichia coli JJ1887]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References