Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 560002..560125 | Replicon | chromosome |
| Accession | NZ_CP014017 | ||
| Organism | Serratia liquefaciens strain FDAARGOS_125 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 560007..560103 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 560002..560125 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL485_RS02720 | 555236..556504 | + | 1269 | WP_048762121.1 | Y-family DNA polymerase | - |
| AL485_RS02725 | 556507..556995 | - | 489 | WP_082748000.1 | SOS response-associated peptidase family protein | - |
| AL485_RS02730 | 557093..558267 | + | 1175 | WP_104410903.1 | IS3 family transposase | - |
| AL485_RS02740 | 558597..558872 | + | 276 | WP_071888867.1 | excisionase | - |
| AL485_RS02745 | 558841..559926 | + | 1086 | WP_048762115.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 560002..560125 | + | 124 | - | - | Antitoxin |
| - | 560007..560103 | - | 97 | - | - | Toxin |
| AL485_RS02755 | 560245..560586 | - | 342 | WP_020826380.1 | YebY family protein | - |
| AL485_RS02760 | 560656..561537 | - | 882 | WP_048762112.1 | copper homeostasis membrane protein CopD | - |
| AL485_RS02765 | 561541..561924 | - | 384 | WP_020826378.1 | CopC domain-containing protein YobA | - |
| AL485_RS02770 | 562240..562758 | - | 519 | WP_020826377.1 | non-heme ferritin | - |
| AL485_RS02775 | 563131..563361 | + | 231 | WP_020826376.1 | DNA polymerase III subunit theta | - |
| AL485_RS02780 | 563392..564345 | - | 954 | WP_020826375.1 | prolyl aminopeptidase | - |
| AL485_RS02785 | 564518..564943 | - | 426 | WP_020826374.1 | RNA polymerase-binding protein DksA | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 520314..566050 | 45736 | |
| - | flank | IS/Tn | - | - | 557093..557404 | 311 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T59910 NZ_CP014017:c560103-560007 [Serratia liquefaciens]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 124 bp
>AT59910 NZ_CP014017:560002-560125 [Serratia liquefaciens]
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
