Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2472455..2472726 | Replicon | chromosome |
| Accession | NZ_CP013483 | ||
| Organism | Escherichia coli strain Y5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2472585..2472688 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2472455..2472726 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATO45_RS12115 | 2469010..2469672 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ATO45_RS12120 | 2469696..2470352 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ATO45_RS12125 | 2470454..2470684 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ATO45_RS12130 | 2470823..2471197 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ATO45_RS12135 | 2471201..2472073 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ATO45_RS12140 | 2472086..2472427 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2472455..2472726 | - | 272 | - | - | Antitoxin |
| - | 2472585..2472688 | + | 104 | - | - | Toxin |
| ATO45_RS12150 | 2472823..2473479 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| ATO45_RS12155 | 2473480..2473671 | - | 192 | WP_000457842.1 | YebW family protein | - |
| ATO45_RS12160 | 2473776..2474012 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ATO45_RS12165 | 2474130..2475569 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T58820 NZ_CP013483:2472585-2472688 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT58820 NZ_CP013483:c2472726-2472455 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
