Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040243..2040409 | Replicon | chromosome |
| Accession | NZ_CP013338 | ||
| Organism | Raoultella ornithinolytica strain Yangling I2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040301..2040404 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040243..2040409 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN83_RS09460 | 2035381..2037441 | + | 2061 | WP_064356915.1 | oligopeptidase B | - |
| ATN83_RS09465 | 2037447..2038106 | - | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| ATN83_RS09470 | 2038185..2038415 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| ATN83_RS09475 | 2038542..2038916 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| ATN83_RS09480 | 2038920..2039789 | + | 870 | WP_032686939.1 | copper homeostasis membrane protein CopD | - |
| ATN83_RS09485 | 2039806..2040144 | + | 339 | WP_032686940.1 | YebY family protein | - |
| - | 2040243..2040409 | - | 167 | - | - | Antitoxin |
| - | 2040301..2040404 | + | 104 | - | - | Toxin |
| ATN83_RS28465 | 2040724..2040867 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| ATN83_RS09490 | 2040988..2041959 | - | 972 | WP_172958380.1 | VirK/YbjX family protein | - |
| ATN83_RS09495 | 2042102..2042746 | + | 645 | WP_064356916.1 | protein-serine/threonine phosphatase | - |
| ATN83_RS09500 | 2042752..2042943 | - | 192 | WP_032686984.1 | YebW family protein | - |
| ATN83_RS09505 | 2043037..2043276 | - | 240 | WP_004863958.1 | YebV family protein | - |
| ATN83_RS09510 | 2043391..2044824 | - | 1434 | WP_032686985.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T58462 NZ_CP013338:2040301-2040404 [Raoultella ornithinolytica]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT58462 NZ_CP013338:c2040409-2040243 [Raoultella ornithinolytica]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
