Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2193595..2193866 | Replicon | chromosome |
| Accession | NZ_CP013185 | ||
| Organism | Escherichia coli strain FORC_029 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2193725..2193828 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2193595..2193866 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC29_RS11425 | 2190150..2190812 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FORC29_RS11430 | 2190836..2191492 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FORC29_RS11435 | 2191594..2191824 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FORC29_RS11440 | 2191963..2192337 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FORC29_RS11445 | 2192341..2193213 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FORC29_RS11450 | 2193226..2193567 | + | 342 | WP_088888690.1 | YebY family protein | - |
| - | 2193595..2193866 | - | 272 | - | - | Antitoxin |
| - | 2193725..2193828 | + | 104 | - | - | Toxin |
| FORC29_RS11455 | 2193963..2194619 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| FORC29_RS11460 | 2194620..2194811 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FORC29_RS11465 | 2194916..2195152 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FORC29_RS11470 | 2195270..2196709 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2115859..2194895 | 79036 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T58056 NZ_CP013185:2193725-2193828 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT58056 NZ_CP013185:c2193866-2193595 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
