Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2096920..2097060 | Replicon | chromosome |
| Accession | NZ_CP013046 | ||
| Organism | Serratia marcescens strain B3R3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2096964..2097060 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2096920..2097060 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AR325_RS10015 | 2092188..2092583 | + | 396 | WP_004928846.1 | RidA family protein | - |
| AR325_RS10020 | 2092740..2093693 | + | 954 | WP_060560424.1 | prolyl aminopeptidase | - |
| AR325_RS10025 | 2093725..2093955 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| AR325_RS10030 | 2094300..2094818 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| AR325_RS10035 | 2095111..2095527 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| AR325_RS10040 | 2095530..2096411 | + | 882 | WP_048322945.1 | copper homeostasis membrane protein CopD | - |
| AR325_RS10045 | 2096481..2096822 | + | 342 | WP_060559223.1 | YebY family protein | - |
| - | 2096920..2097060 | - | 141 | - | - | Antitoxin |
| - | 2096964..2097060 | + | 97 | - | - | Toxin |
| AR325_RS10050 | 2097139..2098221 | - | 1083 | WP_060447369.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| AR325_RS10055 | 2098196..2098459 | - | 264 | WP_161727346.1 | excisionase | - |
| AR325_RS10060 | 2098547..2099614 | - | 1068 | WP_060559225.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2088902..2138952 | 50050 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T57823 NZ_CP013046:2096964-2097060 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT57823 NZ_CP013046:c2097060-2096920 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
