Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2418621..2418764 | Replicon | chromosome |
| Accession | NZ_CP012162 | ||
| Organism | Enterobacter roggenkampii strain 35734 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2418656..2418759 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2418621..2418764 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LI67_RS12245 | 2415104..2415766 | - | 663 | WP_044596628.1 | exodeoxyribonuclease X | - |
| LI67_RS12250 | 2415791..2416441 | - | 651 | WP_044596627.1 | carbon-nitrogen hydrolase family protein | - |
| LI67_RS12255 | 2416552..2416782 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| LI67_RS12260 | 2416920..2417291 | + | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| LI67_RS12265 | 2417293..2418162 | + | 870 | WP_044596626.1 | copper homeostasis membrane protein CopD | - |
| LI67_RS12270 | 2418179..2418517 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 2418621..2418764 | - | 144 | - | - | Antitoxin |
| - | 2418656..2418759 | + | 104 | - | - | Toxin |
| LI67_RS12275 | 2418923..2419864 | - | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| LI67_RS12280 | 2420031..2420675 | + | 645 | WP_044596625.1 | protein-serine/threonine phosphatase | - |
| LI67_RS12285 | 2420710..2420949 | - | 240 | WP_008500472.1 | YebV family protein | - |
| LI67_RS12290 | 2421055..2422503 | - | 1449 | WP_199559168.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T56048 NZ_CP012162:2418656-2418759 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT56048 NZ_CP012162:c2418764-2418621 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
