Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1890592..1890737 | Replicon | chromosome |
| Accession | NZ_CP011980 | ||
| Organism | Klebsiella pneumoniae 500_1420 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1890628..1890730 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1890592..1890737 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J052_RS09370 | 1885722..1887782 | + | 2061 | WP_032422099.1 | oligopeptidase B | - |
| J052_RS09375 | 1887786..1888445 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| J052_RS09380 | 1888524..1888754 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| J052_RS09385 | 1888867..1889241 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| J052_RS09390 | 1889245..1890114 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| J052_RS09395 | 1890131..1890469 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1890592..1890737 | - | 146 | - | - | Antitoxin |
| - | 1890628..1890730 | + | 103 | - | - | Toxin |
| J052_RS28590 | 1890772..1890963 | - | 192 | WP_004175432.1 | hypothetical protein | - |
| J052_RS09405 | 1891353..1892357 | - | 1005 | WP_002911397.1 | VirK/YbjX family protein | - |
| J052_RS09410 | 1892478..1893131 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| J052_RS09415 | 1893128..1893319 | - | 192 | WP_002911395.1 | YebW family protein | - |
| J052_RS09420 | 1893417..1893656 | - | 240 | WP_002911393.1 | YebV family protein | - |
| J052_RS09425 | 1893772..1895205 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T55350 NZ_CP011980:1890628-1890730 [Klebsiella pneumoniae 500_1420]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT55350 NZ_CP011980:c1890737-1890592 [Klebsiella pneumoniae 500_1420]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
