Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1886827..1886969 | Replicon | chromosome |
| Accession | NZ_CP011863 | ||
| Organism | Enterobacter asburiae strain ATCC 35953 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1886831..1886934 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1886827..1886969 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJ69_RS25220 | 1882160..1882345 | + | 186 | WP_153251268.1 | hypothetical protein | - |
| ACJ69_RS09260 | 1882415..1882687 | + | 273 | WP_059346942.1 | hypothetical protein | - |
| ACJ69_RS09265 | 1882910..1884805 | + | 1896 | WP_059346943.1 | hypothetical protein | - |
| ACJ69_RS09270 | 1884802..1885095 | + | 294 | WP_054829617.1 | hypothetical protein | - |
| ACJ69_RS09275 | 1885082..1885324 | + | 243 | WP_054829618.1 | DUF4060 family protein | - |
| ACJ69_RS09280 | 1885381..1885641 | + | 261 | WP_054829630.1 | hypothetical protein | - |
| ACJ69_RS09285 | 1885619..1886698 | + | 1080 | WP_059346944.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 1886827..1886969 | + | 143 | - | - | Antitoxin |
| - | 1886831..1886934 | - | 104 | - | - | Toxin |
| ACJ69_RS09290 | 1887073..1887411 | - | 339 | WP_045404471.1 | YebY family protein | - |
| ACJ69_RS09295 | 1887428..1888297 | - | 870 | WP_059346945.1 | copper homeostasis membrane protein CopD | - |
| ACJ69_RS09300 | 1888299..1888670 | - | 372 | WP_054829619.1 | CopC domain-containing protein YobA | - |
| ACJ69_RS09305 | 1888807..1889037 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ACJ69_RS09310 | 1889147..1889797 | + | 651 | WP_059346946.1 | carbon-nitrogen hydrolase family protein | - |
| ACJ69_RS09315 | 1889822..1890484 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1842847..1907777 | 64930 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T55130 NZ_CP011863:c1886934-1886831 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT55130 NZ_CP011863:1886827-1886969 [Enterobacter asburiae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
