Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 4923917..4924529 | Replicon | chromosome |
| Accession | NZ_CP011339 | ||
| Organism | Microcystis panniformis FACHB-1757 | ||
Toxin (Protein)
| Gene name | graT | Uniprot ID | A0A1V4BLH3 |
| Locus tag | VL20_RS23075 | Protein ID | WP_052277943.1 |
| Coordinates | 4923917..4924198 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | L7EDF0 |
| Locus tag | VL20_RS23080 | Protein ID | WP_002733868.1 |
| Coordinates | 4924215..4924529 (+) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VL20_RS23040 (VL20_5588) | 4919359..4919547 | - | 189 | WP_004161691.1 | hypothetical protein | - |
| VL20_RS23045 (VL20_5589) | 4919544..4919831 | - | 288 | WP_002764792.1 | cell division topological specificity factor MinE | - |
| VL20_RS23050 (VL20_5590) | 4919861..4920661 | - | 801 | WP_002764793.1 | septum site-determining protein MinD | - |
| VL20_RS23055 (VL20_5591) | 4920891..4921718 | - | 828 | WP_052277940.1 | septum site-determining protein MinC | - |
| VL20_RS23060 (VL20_5592) | 4921731..4922123 | - | 393 | WP_052277941.1 | hypothetical protein | - |
| VL20_RS23065 (VL20_5594) | 4923017..4923337 | + | 321 | WP_002793380.1 | hypothetical protein | - |
| VL20_RS23070 (VL20_5595) | 4923327..4923770 | + | 444 | WP_052277942.1 | type II toxin-antitoxin system YhaV family toxin | - |
| VL20_RS23075 (VL20_5596) | 4923917..4924198 | + | 282 | WP_052277943.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| VL20_RS23080 (VL20_5597) | 4924215..4924529 | + | 315 | WP_002733868.1 | HigA family addiction module antitoxin | Antitoxin |
| VL20_RS23085 (VL20_5598) | 4924616..4924843 | + | 228 | WP_052277944.1 | type II toxin-antitoxin system YhaV family toxin | - |
| VL20_RS23090 | 4924922..4925236 | - | 315 | WP_052277945.1 | hypothetical protein | - |
| VL20_RS33225 (VL20_5600) | 4925541..4925669 | + | 129 | WP_004161683.1 | hypothetical protein | - |
| VL20_RS33230 | 4925670..4925900 | + | 231 | WP_249264802.1 | hypothetical protein | - |
| VL20_RS23095 (VL20_5601) | 4925868..4927187 | - | 1320 | WP_052277946.1 | four-carbon acid sugar kinase family protein | - |
| VL20_RS23100 (VL20_5602) | 4927338..4928174 | + | 837 | WP_052277947.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 11162.75 Da Isoelectric Point: 10.2927
>T54048 WP_052277943.1 NZ_CP011339:4923917-4924198 [Microcystis panniformis FACHB-1757]
MIKSFASKETEQLFKRKFSRKLPQDIQRNARRKLEVLDAAETLQDLYIPPSNRLEKLSGDRKNQHSIRINDQWRICFIWK
NGNAYNVEIVDYH
MIKSFASKETEQLFKRKFSRKLPQDIQRNARRKLEVLDAAETLQDLYIPPSNRLEKLSGDRKNQHSIRINDQWRICFIWK
NGNAYNVEIVDYH
Download Length: 282 bp
>T54048 NZ_CP011339:4923917-4924198 [Microcystis panniformis FACHB-1757]
ATGATTAAGAGTTTTGCATCTAAGGAGACAGAGCAGTTATTCAAACGTAAATTTTCACGAAAATTACCTCAAGATATTCA
ACGAAATGCTCGGAGAAAGCTAGAAGTTTTAGACGCGGCCGAAACTTTACAGGATTTATACATTCCTCCATCTAATCGGT
TGGAAAAACTCTCAGGAGATAGAAAAAATCAGCATAGTATCCGAATTAACGATCAGTGGCGGATCTGTTTTATTTGGAAA
AATGGCAACGCCTACAATGTAGAAATAGTCGATTATCATTAA
ATGATTAAGAGTTTTGCATCTAAGGAGACAGAGCAGTTATTCAAACGTAAATTTTCACGAAAATTACCTCAAGATATTCA
ACGAAATGCTCGGAGAAAGCTAGAAGTTTTAGACGCGGCCGAAACTTTACAGGATTTATACATTCCTCCATCTAATCGGT
TGGAAAAACTCTCAGGAGATAGAAAAAATCAGCATAGTATCCGAATTAACGATCAGTGGCGGATCTGTTTTATTTGGAAA
AATGGCAACGCCTACAATGTAGAAATAGTCGATTATCATTAA
Antitoxin
Download Length: 105 a.a. Molecular weight: 12332.33 Da Isoelectric Point: 4.8499
>AT54048 WP_002733868.1 NZ_CP011339:4924215-4924529 [Microcystis panniformis FACHB-1757]
MTEKKLLAPIHPGEILLEEFLKPMEISQERLAEDLNVPIEQIKEIIEEKRGITADIALRLSRYFGMSERFWMNLQTRYDI
EVEKDRLRERLEKEVKVYAASQAL
MTEKKLLAPIHPGEILLEEFLKPMEISQERLAEDLNVPIEQIKEIIEEKRGITADIALRLSRYFGMSERFWMNLQTRYDI
EVEKDRLRERLEKEVKVYAASQAL
Download Length: 315 bp
>AT54048 NZ_CP011339:4924215-4924529 [Microcystis panniformis FACHB-1757]
ATGACTGAGAAAAAATTATTAGCCCCCATTCATCCTGGTGAGATTCTGTTAGAAGAATTTCTCAAACCGATGGAAATTAG
CCAAGAACGTTTGGCAGAAGATCTTAATGTACCAATAGAGCAAATCAAGGAAATTATCGAGGAAAAGCGAGGAATTACTG
CCGATATTGCCTTAAGGCTTTCTCGTTATTTTGGTATGTCTGAAAGGTTCTGGATGAATCTTCAAACAAGGTATGATATT
GAAGTAGAAAAAGATAGGCTCAGAGAACGTTTAGAGAAGGAAGTAAAAGTCTATGCTGCTTCACAAGCACTGTAG
ATGACTGAGAAAAAATTATTAGCCCCCATTCATCCTGGTGAGATTCTGTTAGAAGAATTTCTCAAACCGATGGAAATTAG
CCAAGAACGTTTGGCAGAAGATCTTAATGTACCAATAGAGCAAATCAAGGAAATTATCGAGGAAAAGCGAGGAATTACTG
CCGATATTGCCTTAAGGCTTTCTCGTTATTTTGGTATGTCTGAAAGGTTCTGGATGAATCTTCAAACAAGGTATGATATT
GAAGTAGAAAAAGATAGGCTCAGAGAACGTTTAGAGAAGGAAGTAAAAGTCTATGCTGCTTCACAAGCACTGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1V4BLH3 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | L7EDF0 |