Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 3934314..3934919 | Replicon | chromosome |
| Accession | NZ_CP011339 | ||
| Organism | Microcystis panniformis FACHB-1757 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | I4FMI0 |
| Locus tag | VL20_RS18875 | Protein ID | WP_002740810.1 |
| Coordinates | 3934314..3934595 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | VL20_RS18880 | Protein ID | WP_036399402.1 |
| Coordinates | 3934605..3934919 (+) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VL20_RS18835 (VL20_4575) | 3929383..3929757 | + | 375 | Protein_3954 | glycogen/starch/alpha-glucan phosphorylase | - |
| VL20_RS18840 (VL20_4576) | 3930173..3930454 | + | 282 | WP_002786273.1 | hemolysin XhlA family protein | - |
| VL20_RS18845 (VL20_4577) | 3930630..3931673 | + | 1044 | WP_052277429.1 | IS630 family transposase | - |
| VL20_RS18850 (VL20_4578) | 3931832..3932056 | - | 225 | WP_239698044.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VL20_RS18855 (VL20_4579) | 3932103..3932318 | - | 216 | WP_002786275.1 | hypothetical protein | - |
| VL20_RS18860 (VL20_4581) | 3932608..3932955 | + | 348 | WP_002751511.1 | hypothetical protein | - |
| VL20_RS18865 (VL20_4582) | 3933027..3933449 | - | 423 | WP_052277431.1 | type II toxin-antitoxin system VapC family toxin | - |
| VL20_RS18870 (VL20_4583) | 3933436..3933696 | - | 261 | WP_002737535.1 | hypothetical protein | - |
| VL20_RS31845 (VL20_4584) | 3933859..3934017 | + | 159 | WP_167341555.1 | hypothetical protein | - |
| VL20_RS18875 (VL20_4585) | 3934314..3934595 | + | 282 | WP_002740810.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| VL20_RS18880 (VL20_4586) | 3934605..3934919 | + | 315 | WP_036399402.1 | HigA family addiction module antitoxin | Antitoxin |
| VL20_RS18885 (VL20_4588) | 3935129..3935341 | + | 213 | WP_002786278.1 | hypothetical protein | - |
| VL20_RS18890 (VL20_4589) | 3935328..3935600 | + | 273 | WP_052277432.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| VL20_RS18895 (VL20_4590) | 3935685..3935837 | - | 153 | WP_284525859.1 | hypothetical protein | - |
| VL20_RS29475 (VL20_4591) | 3936006..3938315 | + | 2310 | WP_284525860.1 | DUF3110 domain-containing protein | - |
| VL20_RS29480 | 3938461..3939537 | + | 1077 | WP_128575258.1 | CHAT domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 11127.76 Da Isoelectric Point: 9.7184
>T54045 WP_002740810.1 NZ_CP011339:3934314-3934595 [Microcystis panniformis FACHB-1757]
VIQNFKDKEAQKVFERKHSRKLPLDIQQVALRKLRMLNRAETLQDLRVPPANRLERLVGDREGQYSIRVNDQWRICFVWQ
NGDALDVEIVDYH
VIQNFKDKEAQKVFERKHSRKLPLDIQQVALRKLRMLNRAETLQDLRVPPANRLERLVGDREGQYSIRVNDQWRICFVWQ
NGDALDVEIVDYH
Download Length: 282 bp
>T54045 NZ_CP011339:3934314-3934595 [Microcystis panniformis FACHB-1757]
GTGATCCAAAACTTTAAAGATAAAGAAGCTCAAAAAGTTTTTGAACGTAAACATTCGCGTAAATTGCCATTAGATATCCA
ACAAGTGGCATTGCGAAAATTGCGGATGCTTAATCGTGCGGAAACCCTGCAAGATCTTCGTGTCCCACCAGCAAATCGAT
TGGAACGTCTGGTTGGTGACAGGGAAGGTCAATATAGCATTCGGGTTAACGATCAATGGCGAATTTGCTTTGTCTGGCAA
AACGGTGATGCTCTAGACGTAGAAATCGTTGATTATCATTGA
GTGATCCAAAACTTTAAAGATAAAGAAGCTCAAAAAGTTTTTGAACGTAAACATTCGCGTAAATTGCCATTAGATATCCA
ACAAGTGGCATTGCGAAAATTGCGGATGCTTAATCGTGCGGAAACCCTGCAAGATCTTCGTGTCCCACCAGCAAATCGAT
TGGAACGTCTGGTTGGTGACAGGGAAGGTCAATATAGCATTCGGGTTAACGATCAATGGCGAATTTGCTTTGTCTGGCAA
AACGGTGATGCTCTAGACGTAGAAATCGTTGATTATCATTGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11812.70 Da Isoelectric Point: 4.0742
>AT54045 WP_036399402.1 NZ_CP011339:3934605-3934919 [Microcystis panniformis FACHB-1757]
MNEDKLMPIHPGEVLLEEFIKPMNLSQNQIALALGVPEQCINEIVHGKQPITADIALRLARYFDMSPRFWLGLQMDYDLD
VVEDEIGDQLDKEVAVMTVICAEK
MNEDKLMPIHPGEVLLEEFIKPMNLSQNQIALALGVPEQCINEIVHGKQPITADIALRLARYFDMSPRFWLGLQMDYDLD
VVEDEIGDQLDKEVAVMTVICAEK
Download Length: 315 bp
>AT54045 NZ_CP011339:3934605-3934919 [Microcystis panniformis FACHB-1757]
ATGAATGAAGATAAACTAATGCCAATTCATCCCGGTGAGGTTCTTTTAGAGGAATTTATCAAGCCAATGAACCTTAGTCA
GAATCAAATAGCTCTGGCTCTTGGAGTTCCCGAACAATGTATTAACGAAATCGTTCACGGAAAGCAGCCTATCACAGCGG
ATATAGCTCTTCGGTTAGCTCGTTATTTTGATATGTCACCGCGATTTTGGCTGGGATTACAAATGGATTACGATCTGGAC
GTTGTTGAAGATGAAATAGGAGATCAATTGGACAAAGAAGTTGCTGTAATGACAGTTATTTGTGCAGAAAAGTAA
ATGAATGAAGATAAACTAATGCCAATTCATCCCGGTGAGGTTCTTTTAGAGGAATTTATCAAGCCAATGAACCTTAGTCA
GAATCAAATAGCTCTGGCTCTTGGAGTTCCCGAACAATGTATTAACGAAATCGTTCACGGAAAGCAGCCTATCACAGCGG
ATATAGCTCTTCGGTTAGCTCGTTATTTTGATATGTCACCGCGATTTTGGCTGGGATTACAAATGGATTACGATCTGGAC
GTTGTTGAAGATGAAATAGGAGATCAATTGGACAAAGAAGTTGCTGTAATGACAGTTATTTGTGCAGAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|