Detailed information of TA system TA053612

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): mqsRA (relBE)/MqsR-MqsA
• Location: 2539899..2540554
• Replicon: chromosome
• Accession: NZ_CP011175
• Organism: Bordetella pertussis strain E976

Toxin (Protein)

• Gene name: mqsR
• Uniprot ID: -
• Locus tag: WU09_RS12275
• Protein ID: WP_047122780.1
• Coordinates: 2540303..2540554 (-)
• Length: 84 a.a.

Antitoxin (Protein)

• Gene name: mqsA
• Uniprot ID: Q7VY40
• Locus tag: WU09_RS12270
• Protein ID: WP_003809516.1
• Coordinates: 2539899..2540300 (-)
• Length: 134 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
WU09_RS12240	2535082..2536104	-	1023	WP_003809532.1	amino acid ABC transporter substrate-binding protein	-
WU09_RS12245	2536241..2537278	-	1038	WP_023853543.1	threonylcarbamoyl-AMP synthase	-
WU09_RS12250	2537298..2538488	-	1191	WP_010930406.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
WU09_RS12255	2538491..2539006	-	516	WP_019247930.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
WU09_RS12260	2539156..2539635	-	480	WP_010930405.1	disulfide bond formation protein B	-
WU09_RS12265	2539643..2539879	-	237	WP_010930404.1	membrane protein	-
WU09_RS12270	2539899..2540300	-	402	WP_003809516.1	type II toxin-antitoxin system MqsA family antitoxin	Antitoxin
WU09_RS12275	2540303..2540554	-	252	WP_047122780.1	type II toxin-antitoxin system MqsR family toxin	Toxin
WU09_RS12280	2540609..2541490	-	882	WP_003809513.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
WU09_RS12285	2541715..2542161	+	447	WP_003819827.1	GFA family protein	-
WU09_RS12290	2542246..2543310	-	1065	WP_003809510.1	fructose-bisphosphate aldolase class II	-
WU09_RS12295	2543447..2544028	-	582	WP_019247931.1	molybdenum cofactor biosysynthesis protein	-
WU09_RS12300	2544263..2545393	+	1131	WP_010930401.1	helix-turn-helix transcriptional regulator	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin MqsR (10-82)

Antitoxin

• Antitoxin MqsA/HigA-2 (1-131)

Sequences

Toxin

Protein

• Length: 84 a.a.
• Molecular weight: 8952.52 Da
• Isoelectric Point: 9.7242

>T53612 WP_047122780.1 NZ_CP011175:c2540554-2540303 [Bordetella pertussis]
IGGAATKKPGQKRRAGAAALGLDFSAMVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVPIVSF
KEL

Nucleotide

• Length: 252 bp

>T53612 NZ_CP011175:c2540554-2540303 [Bordetella pertussis]
ATTGGAGGCGCGGCGACAAAAAAGCCGGGACAAAAGCGTCGCGCCGGGGCGGCGGCGCTGGGGCTGGATTTCAGCGCCAT
GGTCGAAATCGTGCTTGCATTGACACCGCGGGATTTCCACAAAAGCATGACTACCCATGCCGACCATCGCATTTGGCAGG
ACGTCTATTGCCCGGTGACAGCGATGGGCGCCGTCTACCTGAAGCTGACGGTCCTCGACGGCGTGCCGATCGTGTCGTTC
AAGGAGTTGTGA

Antitoxin

Protein

• Length: 134 a.a.
• Molecular weight: 14528.70 Da
• Isoelectric Point: 8.5005

>AT53612 WP_003809516.1 NZ_CP011175:c2540300-2539899 [Bordetella pertussis]
MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVLDGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRK
LGLDQREAAALFGGGTNAFSRYENGKTRPPLALVKLLRLLDRHPELLEEVRAD

Nucleotide

• Length: 402 bp

>AT53612 NZ_CP011175:c2540300-2539899 [Bordetella pertussis]
ATGAAGTGTCCCGTATGCGGAGCGGCCGCGCTGGCGCGTGATACTCGCGATGTGCCCTATAGCTACAAGGGCGAGACCAT
CACGATTGCGGCGGTGACGGGCGACTGGTGTCCGGCATGCGGCGAGAACGTGCTCGATGGCGCTGAATCGGCGCGGGTGA
GCGAGGCCATGCTGGCTTTCAACCGCCTGGTCAACGCCCGCCGCGTCGACCCCGGGTTCATCGTGCGGGTGCGCAGGAAG
CTGGGGCTGGACCAGCGCGAAGCCGCGGCGCTGTTCGGCGGCGGCACCAATGCGTTCTCGCGTTACGAGAACGGCAAGAC
GCGCCCGCCGCTGGCGCTGGTGAAGCTGCTCAGGCTGCTGGATCGCCATCCGGAGCTGCTGGAGGAAGTCCGTGCGGATT
GA

Structures

Antitoxin

• AlphaFold DB: A0A0H3LKS6