Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2080561..2080832 | Replicon | chromosome |
| Accession | NZ_CP010315 | ||
| Organism | Escherichia coli strain 789 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2080599..2080702 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2080561..2080832 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AC789_RS10245 | 2077718..2079157 | + | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AC789_RS10250 | 2079275..2079511 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| AC789_RS10255 | 2079616..2079807 | + | 192 | WP_001296140.1 | YebW family protein | - |
| AC789_RS10260 | 2079808..2080464 | - | 657 | WP_044502248.1 | protein-serine/threonine phosphatase | - |
| - | 2080561..2080832 | + | 272 | - | - | Antitoxin |
| - | 2080599..2080702 | - | 104 | - | - | Toxin |
| AC789_RS10270 | 2080860..2081201 | - | 342 | WP_000976492.1 | YebY family protein | - |
| AC789_RS10275 | 2081214..2082086 | - | 873 | WP_000879334.1 | copper homeostasis membrane protein CopD | - |
| AC789_RS10280 | 2082090..2082464 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| AC789_RS10285 | 2082603..2082833 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| AC789_RS10290 | 2082935..2083591 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| AC789_RS10295 | 2083615..2084277 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T52021 NZ_CP010315:c2080702-2080599 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT52021 NZ_CP010315:2080561-2080832 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
