Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1509077..1509348 | Replicon | chromosome |
| Accession | NZ_CP010228 | ||
| Organism | Escherichia coli strain S3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1509207..1509310 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1509077..1509348 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG65_RS07875 | 1505632..1506294 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG65_RS07880 | 1506318..1506974 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG65_RS07885 | 1507076..1507306 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG65_RS07890 | 1507445..1507819 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG65_RS07895 | 1507823..1508695 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG65_RS07900 | 1508708..1509049 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1509077..1509348 | - | 272 | - | - | Antitoxin |
| - | 1509207..1509310 | + | 104 | - | - | Toxin |
| RG65_RS07910 | 1509445..1510101 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| RG65_RS07915 | 1510102..1510293 | - | 192 | WP_001296140.1 | YebW family protein | - |
| RG65_RS07920 | 1510398..1510634 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG65_RS07925 | 1510752..1512191 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51522 NZ_CP010228:1509207-1509310 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT51522 NZ_CP010228:c1509348-1509077 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
