Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1380993..1381227 | Replicon | chromosome |
| Accession | NZ_CP010206 | ||
| Organism | Escherichia coli strain M11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1381123..1381226 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1380993..1381227 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG60_RS07015 | 1377548..1378210 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| RG60_RS07020 | 1378234..1378890 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG60_RS07025 | 1378992..1379222 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG60_RS07030 | 1379361..1379735 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG60_RS07035 | 1379739..1380611 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG60_RS07040 | 1380624..1380965 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1380993..1381227 | - | 235 | - | - | Antitoxin |
| - | 1381123..1381226 | + | 104 | - | - | Toxin |
| RG60_RS07050 | 1381358..1382434 | - | 1077 | WP_001189091.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| RG60_RS07055 | 1382400..1382681 | - | 282 | WP_001311878.1 | excisionase | - |
| RG60_RS07060 | 1382788..1382976 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 1382792..1382970 | + | 179 | NuclAT_0 | - | - |
| - | 1382792..1382970 | + | 179 | NuclAT_0 | - | - |
| - | 1382792..1382970 | + | 179 | NuclAT_0 | - | - |
| - | 1382792..1382970 | + | 179 | NuclAT_0 | - | - |
| RG60_RS07065 | 1382969..1383163 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| RG60_RS07070 | 1383220..1384029 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1377548..1439419 | 61871 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T51358 NZ_CP010206:1381123-1381226 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT51358 NZ_CP010206:c1381227-1380993 [Escherichia coli]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
