Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4705064..4705335 | Replicon | chromosome |
| Accession | NZ_CP010134 | ||
| Organism | Escherichia coli strain D1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4705102..4705205 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4705064..4705335 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG34_RS24595 | 4702221..4703660 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG34_RS24600 | 4703778..4704014 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG34_RS24605 | 4704119..4704310 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG34_RS24610 | 4704311..4704967 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4705064..4705335 | + | 272 | - | - | Antitoxin |
| - | 4705102..4705205 | - | 104 | - | - | Toxin |
| RG34_RS24620 | 4705363..4705704 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG34_RS24625 | 4705717..4706589 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG34_RS24630 | 4706593..4706967 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG34_RS24635 | 4707106..4707336 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG34_RS24640 | 4707438..4708094 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| RG34_RS24645 | 4708118..4708780 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50657 NZ_CP010134:c4705205-4705102 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50657 NZ_CP010134:4705064-4705335 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
