Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3719693..3719964 | Replicon | chromosome |
| Accession | NZ_CP010132 | ||
| Organism | Escherichia coli strain C10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3719731..3719834 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3719693..3719964 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG32_RS19335 | 3716850..3718289 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| RG32_RS19340 | 3718407..3718643 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| RG32_RS19345 | 3718748..3718939 | + | 192 | WP_001296140.1 | YebW family protein | - |
| RG32_RS19350 | 3718940..3719596 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3719693..3719964 | + | 272 | - | - | Antitoxin |
| - | 3719731..3719834 | - | 104 | - | - | Toxin |
| RG32_RS19360 | 3719992..3720333 | - | 342 | WP_000976492.1 | YebY family protein | - |
| RG32_RS19365 | 3720346..3721218 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| RG32_RS19370 | 3721222..3721596 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| RG32_RS19375 | 3721735..3721965 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG32_RS19380 | 3722067..3722723 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG32_RS19385 | 3722747..3723409 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50606 NZ_CP010132:c3719834-3719731 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50606 NZ_CP010132:3719693-3719964 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
