Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046839..2047110 | Replicon | chromosome |
| Accession | NZ_CP010129 | ||
| Organism | Escherichia coli strain C9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046969..2047072 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046839..2047110 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG31_RS10900 | 2043394..2044056 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| RG31_RS10905 | 2044080..2044736 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| RG31_RS10910 | 2044838..2045068 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| RG31_RS10915 | 2045207..2045581 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| RG31_RS10920 | 2045585..2046457 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| RG31_RS10925 | 2046470..2046811 | + | 342 | WP_072651707.1 | YebY family protein | - |
| - | 2046839..2047110 | - | 272 | - | - | Antitoxin |
| - | 2046969..2047072 | + | 104 | - | - | Toxin |
| RG31_RS10935 | 2047207..2047863 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| RG31_RS10940 | 2047864..2048055 | - | 192 | WP_001338167.1 | YebW family protein | - |
| RG31_RS10945 | 2048160..2048396 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| RG31_RS10950 | 2048514..2049953 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T50567 NZ_CP010129:2046969-2047072 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT50567 NZ_CP010129:c2047110-2046839 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
